pycellfit
0.1.0
Overview and install
Package modules
pycellfit package
Submodules
pycellfit.utils module
pycellfit.junction module
pycellfit.edge module
pycellfit.tension_vector module
pycellfit.cell module
pycellfit.mesh module
pycellfit.constrained_circle_fit module
pycellfit.circle_fit_helpers module
pycellfit.segmentation_transform module
pycellfit.segmentation_transform_utils module
Module contents
pycellfit
Docs
»
Index
Edit on GitHub
Index
A
|
B
|
C
|
D
|
E
|
F
|
I
|
J
|
L
|
M
|
N
|
P
|
Q
|
R
|
S
|
T
|
W
|
X
|
Y
A
a0() (in module pycellfit.circle_fit_helpers)
a1() (in module pycellfit.circle_fit_helpers)
a2() (in module pycellfit.circle_fit_helpers)
add_cell() (pycellfit.mesh.Mesh method)
add_edge() (pycellfit.junction.Junction method)
add_edge_point() (pycellfit.cell.Cell method)
algebraic_circle_fit() (in module pycellfit.constrained_circle_fit)
approximate_cell_center() (pycellfit.cell.Cell method)
B
b0() (in module pycellfit.circle_fit_helpers)
b1() (in module pycellfit.circle_fit_helpers)
b2() (in module pycellfit.circle_fit_helpers)
C
Cell (class in pycellfit.cell)
center (pycellfit.edge.Edge attribute)
center_point_to_t_alpha_beta() (in module pycellfit.constrained_circle_fit)
clockwiseangle_and_distance() (pycellfit.cell.Cell method)
constraint() (in module pycellfit.constrained_circle_fit)
constraint2() (in module pycellfit.constrained_circle_fit)
contains_triple_junction() (in module pycellfit.utils)
coordinates (pycellfit.junction.Junction attribute)
corresponding_edge (pycellfit.tension_vector.TensionVector attribute)
corresponding_tension_vector (pycellfit.edge.Edge attribute)
D
degree (pycellfit.junction.Junction attribute)
direction (pycellfit.tension_vector.TensionVector attribute)
distance() (in module pycellfit.circle_fit_helpers)
E
Edge (class in pycellfit.edge)
edge_points_cw (pycellfit.cell.Cell attribute)
edges (pycellfit.junction.Junction attribute)
end_node (pycellfit.edge.Edge attribute)
extract_all_points() (in module pycellfit.utils)
F
f() (in module pycellfit.constrained_circle_fit)
fill_region() (in module pycellfit.segmentation_transform_utils)
fit() (in module pycellfit.constrained_circle_fit)
I
id_iter (pycellfit.edge.Edge attribute)
(pycellfit.junction.Junction attribute)
(pycellfit.tension_vector.TensionVector attribute)
J
Junction (class in pycellfit.junction)
L
label (pycellfit.cell.Cell attribute)
(pycellfit.tension_vector.TensionVector attribute)
locate_triple_junctions() (in module pycellfit.utils)
M
M() (in module pycellfit.circle_fit_helpers)
magnitude (pycellfit.tension_vector.TensionVector attribute)
make_segments() (in module pycellfit.utils)
Mesh (class in pycellfit.mesh)
N
number_of_cells (pycellfit.mesh.Mesh attribute)
number_of_edge_points (pycellfit.cell.Cell attribute)
number_of_edges (pycellfit.mesh.Mesh attribute)
number_of_junctions (pycellfit.mesh.Mesh attribute)
number_of_triple_junctions (pycellfit.mesh.Mesh attribute)
P
pad_with() (in module pycellfit.segmentation_transform_utils)
plot_data_and_circle_fit() (in module pycellfit.constrained_circle_fit)
pycellfit (module)
,
[1]
pycellfit.cell (module)
pycellfit.circle_fit_helpers (module)
pycellfit.constrained_circle_fit (module)
pycellfit.edge (module)
pycellfit.junction (module)
pycellfit.mesh (module)
pycellfit.segmentation_transform (module)
pycellfit.segmentation_transform_utils (module)
pycellfit.tension_vector (module)
pycellfit.utils (module)
Q
q() (in module pycellfit.circle_fit_helpers)
qx() (in module pycellfit.circle_fit_helpers)
qxx() (in module pycellfit.circle_fit_helpers)
qxy() (in module pycellfit.circle_fit_helpers)
qy() (in module pycellfit.circle_fit_helpers)
qyy() (in module pycellfit.circle_fit_helpers)
R
r() (in module pycellfit.constrained_circle_fit)
radius (pycellfit.edge.Edge attribute)
read_segmented_image() (in module pycellfit.utils)
remove_cell() (pycellfit.mesh.Mesh method)
remove_edge() (pycellfit.junction.Junction method)
S
skeleton_to_watershed() (in module pycellfit.segmentation_transform)
start_node (pycellfit.edge.Edge attribute)
T
t_alpha_beta_to_center_radius() (in module pycellfit.constrained_circle_fit)
tension_vectors (pycellfit.junction.Junction attribute)
TensionVector (class in pycellfit.tension_vector)
test1() (in module pycellfit.constrained_circle_fit)
test2() (in module pycellfit.constrained_circle_fit)
W
watershed_to_skeleton() (in module pycellfit.segmentation_transform)
X
x (pycellfit.junction.Junction attribute)
x_component (pycellfit.tension_vector.TensionVector attribute)
xc (pycellfit.edge.Edge attribute)
Y
y (pycellfit.junction.Junction attribute)
y_component (pycellfit.tension_vector.TensionVector attribute)
yc (pycellfit.edge.Edge attribute)
Read the Docs
v: 0.1.0
Versions
latest
stable
0.1.0
0.0.7
Downloads
On Read the Docs
Project Home
Builds
Free document hosting provided by
Read the Docs
.